Hi Mads what does it look like if you move off the mideline? Or check a coronal view? Sagittal views of the midline are notoriously bad for judging skull stripping accuracy
cheers Bruce On Tue, 19 Aug 2014, Mads Jensen wrote: > Dear list, > > I have problem with the brainmask from a subject where there is removed > to much of the gray matter. So, I would like to hear if someone has a > good idea where I should start to fix this issue? > > I have attached a jpgs of the brainmask and orig, and a link to the > recon-all.log > > best regards, > mads > > > https://dl.dropboxusercontent.com/u/915037/recon-all.log > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
