Thank you Doug for this reply ! Best,
------------------------------------- Matthieu Vanhoutte, MSc Research Engineer - Department of Neuroradiology Regional University Hospital, Lille, France 2014-08-19 16:55 GMT+02:00 Douglas Greve <gr...@nmr.mgh.harvard.edu>: > > By using --sfmt curv and --tfmt curv you are saying that the input and > output formats are curv. But they are nifti. Try removing the --sfmt and > --tfmt (it will automatically detect that they are nifti) > doug > > > On 8/18/14 10:40 AM, Matthieu Vanhoutte wrote: > > > Dear experts, > > I try to project on fsaverage CBF maps computed on surface, but when > trying to look at the mri_info of the output file > "meanCBF_0_s1.5asl.rem.mc.s6.fsaverage.lh.nii" I got this error : > *niiRead(): bad number of dimensions (13734) in > /home/matthieu/NAS/pierre/Epilepsy/FreeSurfer5.0/Patients_fmri_dti//Delforterie_Julien/asl_COR_PVEnew/meanCBF_0_s1.5asl.rem.mc.s6.fsaverage.lh.nii* > > Here below the command lines used : > > * # CBF map * > *computed on surface **# fsaverage & lh* > > *mri_surf2surf --srcsubject Delforterie_Julien --srchemi lh --srcsurfreg > sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg > --sval meanCBF_0_s1.5asl.rem.mc.s6.lh.nii --sfmt curv --noreshape > --no-cortex --tval meanCBF_0_s1.5asl.rem.mc.s6.fsaverage.lh.nii --tfmt curv* > > You can find data file joined to this mail. > > Thanks in advance for helping ! > > Best regards, > > ------------------------------------- > Matthieu Vanhoutte, MSc > Research Engineer - Department of Neuroradiology > Regional University Hospital, Lille, France > > > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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