Hi Alejandra
sorry, that's a bug we fixed in 5.3. You need a new version of
mris_topo_fixer and mris_fix_topology
cheers
Bruce
On Fri, 1 Aug 2014, Alejandra Machado wrote:
Hi,
i'm a novel freesurfer user and i'm afraid i need some help here, please!
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FREESURFER_HOME: /usr/local/freesurfer-5.1
Build stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
Debian version: wheezy/sid
Kernel info: Linux 3.2.0-65-generic x86_64
command executed: fully-automated processing, no flags! (-autorecon-all)
ERROR: _FindFacePath: could not find path!
/data-02/alejandra/projects/genic/nc155_modif/scripts
mris_remove_intersection ../surf/lh.orig ../surf/lh.orig
intersection removal took 0.00 hours
removing intersecting faces
writing corrected surface to ../surf/lh.orig
rm ../surf/lh.inflated
cp ../surf/lh.orig_corrected ../surf/lh.orig
Linux siv 3.2.0-65-generic #99-Ubuntu SMP Fri Jul 4 21:03:29 UTC 2014 x86_64
x86_64 x86_64 GNU/Linux
recon-all -s nc155_modif exited with ERRORS at Tue Jul 15 19:02:51 CEST 2014
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I'm having trouble with the processing of one subject, which exited with
Errors. I understand the process fails before completing the recon-all2
part, after topology fixing but then, while correcting surfaces, i don't
exactly know what's happening. It seems it can't find the proper output
(lh.orig_corrected), is that right? In that case, how should i proceed or
which processing step should i try manually to try to solve this issue?
thank you!!
Alejandra
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