The new version uses 2, 41, 77, 251-255, but you should look through $FREESURFER_HOME/FreeSurferColorLUT.txt to get the ROIs you want
On 07/30/2014 06:39 PM, Alshikho, Mohamad J. wrote: > Thank you Doug, > Do you mean an error in the script that running this command line ?! kindly > what is the number of IDs that I can add after the flag --match ? > > Mohamad > > -----Original Message----- > From: freesurfer-boun...@nmr.mgh.harvard.edu > [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve > Sent: Wednesday, July 30, 2014 4:50 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] mri_binzrize (flag --wm ) > > > That was an error, 82 should not be in there. > doug > > On 07/30/2014 03:07 PM, Bruce Fischl wrote: >> Hi Mohamad >> Right-non-WM-hypointensities are hypointense voxels (in T1 images) in >> the right hemisphere in regions that are not normally white matter >> (like the middle of the putamen). >> >> I'll leave your other questions for Doug >> >> cheers >> Bruce >> >> >> On Wed, 30 Jul 2014, Alshikho, Mohamad J. wrote: >> >>> Hi, >>> >>> I have a question about the flag " -wm" in mri_binarize: >>> >>> The following segments IDs 8 2 41 82 251 252 253 254 255 are included >>> in this flag (based on the summary of this command line when I run it). >>> Kindly >>> what is the segment ID (Right-non-WM-hypointensities) means? and why >>> the (left-non-WM-hypointensities ) is not included in this flag? Also >>> what is maximum number of segments IDs that I can include in this >>> command line using the flag -match ? >>> >>> Thanks, >>> >>> Mohamad >>> >>> >>> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
