Got it. Thanks Bruce.
On Mon, Jul 28, 2014 at 11:18 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > phew. Then you should be able to copy those over to your new runs if you > want (that is, copy all the 1s and 255s into the volumes in the new > directories). I assume you are rerunning recon-all from scratch? Or you > could just copy the whole directory, and rerun recon-all -all on the new > directory and it should recreate everything while preserving edits > > > cheers > Bruce > > On Mon, 28 Jul 2014, Jason Tourville wrote: > > Hi Bruce,Used v5.3 for original edits using the "recon" mode in freeview >> so >> >> edits used 1 for "off" and 255 for "on". >> >> Jason >> >> >> On Mon, Jul 28, 2014 at 9:22 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu >> > >> wrote: >> Hi Jason >> >> what version? Did it support recon mode? The edits need to use 1 >> for "off" and 255 for "on", otherwise we can't track them. >> >> cheers >> Bruce >> On Mon, 28 Jul 2014, Jason Tourville wrote: >> >> Hi Bruce,I used Freeview to edit the brainmask.mgz, >> wm.mgz, and >> brain.finalsurfs.manedit.mgz volumes. >> >> Cheers, >> Jason >> >> >> On Fri, Jul 25, 2014 at 9:23 PM, Bruce Fischl >> <fis...@nmr.mgh.harvard.edu> >> wrote: >> Hi Jason. >> How were the edits done? >> Cheers >> Bruce >> >> > On Jul 25, 2014, at 10:40 AM, Jason >> Tourville >> <jayt...@gmail.com> wrote: >> > >> > Hi there, >> > We have performed manual volume edits on a >> number of scans. >> Recently, we ran those scans through recon-all >> with a new Tal >> volume target. The seg and surfaces are >> improved using the new >> target but most of the manual edits performed >> on the earlier >> version would improve the surfaces. Is there >> an established >> means for porting the manually edited voxel >> values to the >> volumes of the new re-con? >> > >> > Thanks, >> > Jason >> > >> > >> > -- >> > Jason A. Tourville, Ph.D. >> > Research Assistant Professor >> > Department of Speech, Language, >> > and Hearing Sciences >> > Boston University >> > 677 Beacon St. >> > Boston, MA 02215 >> > Phone: (617)353-9484 >> > Fax: (617)353-7755 >> > _______________________________________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu >> > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for >> the person to whom >> it is >> addressed. If you believe this e-mail was sent to >> you in error and the >> e-mail >> contains patient information, please contact the >> Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the >> e-mail was sent to you >> in error >> but does not contain patient information, please >> contact the sender >> and properly >> dispose of the e-mail. >> >> >> >> >> -- >> Jason A. Tourville, Ph.D. >> Research Assistant Professor >> Department of Speech, Language, >> and Hearing Sciences >> Boston University >> 677 Beacon St. >> Boston, MA 02215 >> Phone: (617)353-9484 >> Fax: (617)353-7755 >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom >> it is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. >> >> >> >> >> -- >> Jason A. Tourville, Ph.D. >> Research Assistant Professor >> Department of Speech, Language, >> and Hearing Sciences >> Boston University >> 677 Beacon St. >> Boston, MA 02215 >> Phone: (617)353-9484 >> Fax: (617)353-7755 >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- Jason A. Tourville, Ph.D. Research Assistant Professor Department of Speech, Language, and Hearing Sciences Boston University 677 Beacon St. Boston, MA 02215 Phone: (617)353-9484 Fax: (617)353-7755
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