Hi Cat - I'll have to see your trac-all.log, I can't tell what is going on just from that one line.
a.y On Tue, 22 Jul 2014, Cat Chong wrote:
Dear Anastasia, With the new Tracula update installed, I ran the command: trac-all –qa –c dmrirc_file with location of bval specified and received the following error after ‘Loading volume-to-baseline affine transformations’ Could not open ../dmri/ dwi.ecclog for reading. It seems like all subjects do have the dwi.ecclog in their /dmri/ directories. Any ideas of what might have gone wrong? Cheers, Cat On Monday, July 21, 2014 1:53 PM, Anastasia Yendiki <ayend...@nmr.mgh.harvard.edu> wrote: Hi Cat - Just install the update and run trac-all -qa. This will produce the motion measures. Check the tutorial for where to find the output. a.y On Mon, 21 Jul 2014, Cat Chong wrote: > Hello Anastasia, > > I ran Tracula on Freesurfer 5.3 but without the 2013 Tracula updates. Now, > I would like to use the command "dwi_motion" on my data. I have installed > the updates, but will I have to completely reprocess my data inducing steps > trac-all -prep, trace-all -bedp, and trac-all path in order to use > dwi_motion? > > cheers, > Cat > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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