Hi there: As of now, FreeSurfer does not parcellate the cerebellar vermis. It gives you 4 measurements of the cerebellum (Left total, left WM, Right total and right WM).
There is a toolbox called SUIT that works within SPM 8 that can accomplish this for you. See details at the website below: http://www.icn.ucl.ac.uk/motorcontrol/imaging/suit.htm best, Alan Francis On Tue, Jul 15, 2014 at 8:53 AM, Sarosh, Cyrus <csar...@med.umich.edu> wrote: > We are interested in using the Cerebellar vermis for an analysis with > our PET data. Is the cerebellar vermis segmented during the FreeSurfer > pipeline analysis? If it is, which file is it located in or how can I > export a nifti file containing this segmentation? > > > > Thanks, > > > > Cyrus Sarosh > > [image: Description: Description: Description: Description: Description: > Description: Description: cid:image002.png@01CC3BB7.F8D9A990] > > Research Technician Senior > > Department of Radiology > > Functional Neuroimaging, Cognitive and Mobility Laboratory > > > > > > ********************************************************** > Electronic Mail is not secure, may not be read every day, and should not > be used for urgent or sensitive issues > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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