Dear Sir/Madam, I am a masters student at Newcastle University using Freesurfer to extract data from MRI scans.
When trying to use the command lines in terminal, I seem to be getting an error message which I was wondering if you could help me with. The command line I am using is : recon-all -autorecon-all - subjid sam01 The error message displayed is: WARNING: tcsh v6.17.06 has an exit code bug! Please update tcsh ERROR: Flag - unrecognized. -autorecon-all -subjid try01 Linux xubuntu-VirtualBox 3.2.4-64-generic #97-Ubuntu SMP Wed Jun 4 22:03:48 UTC recon-all -s exited with ERRORs at Mon Jun 23 06:47:34 EDT 2014 I have tried the help guide which suggest to update the VM and I have tried to uninstall and re-install Freesurfer but I still get the same error message. I also get the same error message when trying with a different subjid . Please can you give me further guidance on how to fix this error so that I can continue working with Freesurfer. Thank You, Kind Regards, Paras Patel Newcastle University _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
