fsaverage On 06/26/2014 12:56 PM, Tara Ann Miskovich wrote: > One last question. What would I put as the source subject? Do I need > something there? > > ----- Original Message ----- > From: "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> > To: freesurfer@nmr.mgh.harvard.edu > Sent: Thursday, June 26, 2014 11:37:40 AM > Subject: Re: [Freesurfer] Qdec Annotation to Individual > > > Try using this version of mri_surf2surf. I've also put example 6 below > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_surf2surf > > You can give it the full path to the input annotation > > doug > > > 6. Convert the annotation for one subject to the surface of another > > mri_surf2surf --srcsubject subj1 --trgsubject subj2 --hemi lh \ > --sval-annot $SUBJECTS_DIR/subj1/label/lh.aparc.annot \ > --tval $SUBJECTS_DIR/subj2/label/lh.subj1.aparc.annot > > This will create $SUBJECTS_DIR/subj2/label/lh.subj1.aparc.annot. > The --sval-annot flag will also change the map method to nnf so that > the annot indices are not averaged. Note: this is not a substitute > for running the cortical parcellation! The parcellations that it > maps to the new subject may not be appropriate for that subject. > > > On 06/26/2014 12:34 PM, Tara Ann Miskovich wrote: >> Thank you for your response Doug. On my help it only goes up to example 5. I >> am trying to figure out how to do it without a subject1 since the annotation >> is in the qdec directory. >> >> Thanks >> >> ----- Original Message ----- >> From: "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> >> To: freesurfer@nmr.mgh.harvard.edu >> Sent: Thursday, June 26, 2014 11:05:49 AM >> Subject: Re: [Freesurfer] Qdec Annotation to Individual >> >> >> You can use mri_surf2surf with the --sval-annot option. Run it with >> --help and look at example 6 >> doug >> >> On 06/26/2014 11:04 AM, Tara Ann Miskovich wrote: >>> Hello, >>> >>> I was hoping someone could help me map with mapping my annotation from my >>> significant qdec clusters into each individual space. >>> >>> Thanks! >>> >>> Tara >>> >>> >>> Tara A. Miskovich, B.A. >>> Affective Neuroscience Laboratory >>> Department of Psychology >>> University of Wisconsin-Milwaukee >>> 334 Garland Hall >>> misko...@uwm.edu >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>>
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
