Hi Victor If you upload the subject we will take a look Bruce > On Jun 19, 2014, at 1:59 PM, Victor Kovac <kovac...@umn.edu> wrote: > > Hello, > > I have run recon-all on two timepoints of a subject (MPS1011-4 and > MPS1011-5). I added control points to MPS1011-4 after the initial recon-all > processing because large areas of white matter were excluded. Unfortunately, > ~50% of the control points I added were apparently ignored, as they did not > cause the missed wm areas to be segmented (see attached images). > > I have run into this problem in a few other subjects as well, where large wm > areas are missed even after adding control points and running recon-all > -autorecon2-cp -autorecon3 > > The other timepoint exited with errors, leaving the brain unsegmented. > > Any advice on how to accurately analyze these timepoints would be greatly > appreciated. Their recon-all logs are also attached. > > Thank you! > Victor > <MPS1011-4a.png> > <MPS1011-4b.png> > <recon-all.log> > <recon-all.log> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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