Hi, So I've now tried several subjects on my own computer and they all gave me this fault. I then tried several on another and it worked.
If I didn't update my OS version or my freesurfer version, is there another software update that could give me this fault? Many thanks, Gill On May 30, 2014, at 11:24 AM, Douglas N Greve wrote: > > It might be the data you are trying to load in. Does it happen with > other subjects or volumes? > > On 05/30/2014 12:17 PM, Cooke, Gillian wrote: >> Thanks for the quick responses. >> I'm using version 10.7.5 - I purposely haven't updated this as we've been >> analysing a large set of intervention data. >> I'm also using freesurfer-Darwin-lion-stable-pub-v5.3.0 - again we've been >> consistent with this and have run everything in this version. >> I'm still using the same machine, I'm writing to a large server so there is >> plenty of space. >> The only updates I've installed since I last used Freesurfer successfully >> are safari and iTunes, and I was getting this error before that installation. >> >> On May 30, 2014, at 11:04 AM, Bruce Fischl wrote: >> >>> Hi Gillian >>> >>> what changed? Did you upgrade a video driver? Use a new machine? Update the >>> operating system? Run out of disk space? Something is different.... >>> >>> Bruce >>> On Fri, 30 May 2014, Cooke, Gillian wrote: >>> >>>> Hi, >>>> I've been working with Freesurfer for years and have suddenly been getting >>>> this fault: >>>> tkmedit started: Fri May 30 10:08:23 2014 >>>> /Applications/freesurfer/tktools/tkmedit.bin ACCE633_1 brainmask.mgz >>>> -aux T1.mgz -surfs >>>> $Id: tkmedit.c,v 1.343 2011/03/01 01:41:22 nicks Exp $ $Name: stable5 $ >>>> Set user home dir to /Users/gilliancooke >>>> Set subject home dir to /Volumes/HealthAging/ACCE/Freesurfer/ACCE633_1 >>>> Using interface file /Applications/freesurfer/tktools/tkmedit.tcl >>>> Segfault >>>> Setting global interpreter >>>> xDebug stack (length: 2) >>>> 01: main() >>>> 01: Setting global interpreter >>>> 00:Z K <zkauf...@nmr.mgh.harvard.edu> >>>> 00: >>>> Any suggestions? >>>> Many thanks, >>>> Gill >>>> _____________________ >>>> Gillian Cooke, Ph.D. >>>> Postdoctoral Research Associate >>>> Lifelong Brain & Cognition Lab >>>> Beckman Institute >>>> University of Illinois, Urbana >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> The information in this e-mail is intended only for the person to whom it is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you in >>> error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
