Hello Alejandra, I've seen this error before when people have tried to run freesurfer on cluster machines. The error indicates that the necessary X-libs are not installed. Google tells me that if you or your sys admin can install libXScrnSaver onto your machine it *should* fix it.
Best, -Zeke On 05/16/2014 10:26 AM, Alejandra Machado wrote: > Hello, > > i'm trying to setup freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0. > > I think i've done downloading properly but i'm having some trouble with > installation. I can set up enviroment and when testing freesurfer with > some of the scripts from the page, sometimes it works but sometimes i > get an error. > > Can you please help me? > > Thank you! > Alejandra > > > Ale:~> setenv FREESURFER_HOME /usr/local/freesurfer > Ale:~> source $FREESURFER_HOME/SetUpFreeSurfer.csh > -------- freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 -------- > Setting up environment for FreeSurfer/FS-FAST (and FSL) > FREESURFER_HOME /usr/local/freesurfer > FSFAST_HOME /usr/local/freesurfer/fsfast > FSF_OUTPUT_FORMAT nii.gz > SUBJECTS_DIR /usr/local/freesurfer/subjects > MNI_DIR /usr/local/freesurfer/mni > Ale:~> freeview -v $SUBJECTS_DIR/bert/mri/norm.mgz -v > $SUBJECTS_DIR/bert/mri/aseg.mgz:colormap=lut:opacity=0.2 -f > $SUBJECTS_DIR/bert/surf/lh.white:edgecolor=yellow -f > $SUBJECTS_DIR/bert/surf/rh.white:edgecolor=yellow -f > $SUBJECTS_DIR/bert/surf/lh.pial:annot=aparc:edgecolor=red -f > $SUBJECTS_DIR/bert/surf/rh.pial:annot=aparc:edgecolor=red > freeview.bin: error while loading shared libraries: libXss.so.1: cannot > open shared object file: No such file or directory > Ale:~> > tkmedit bert orig.mgz > Reading /usr/local/freesurfer/tktools/tkm_common.tcl > Reading /usr/local/freesurfer/tktools/tkm_wrappers.tcl > Reading /usr/local/freesurfer/lib/tcl/fsgdfPlot.tcl > Reading /usr/local/freesurfer/tktools/tkUtils.tcl > % Ale:~> freeview > freeview.bin: error while loading shared libraries: libXss.so.1: cannot > open shared object file: No such file or directory > Ale:~> qdec > qdec.bin: error while loading shared libraries: libXss.so.1: cannot open > shared object file: No such file or directory > Ale:~> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
