surf2vol understands which direction the registration goes and applies it appropriately. Use --outvol thicknessvolume.nii to get a single nifti file output
On 05/07/2014 10:22 PM, 刘东博 wrote: > Dear Greve > Thank you for your reply > I want to use surf2vol to get volume files of gray thickness.And > the --volreg Contains the matrix that maps XYZ in the reference anatomical > to XYZ in the functional volume. So I use bbregister.Why I need not invert > the BBR registration matrix with surf2vol?I mean , the BBR registration > matrix is functional to anatomial volume,the surf2vol need anatomical to > XYZ And I use bbregister --s sub1 --mov /sub1/mri/orig.nii --init-fsl > --reg/sub1/register.dat > --t1;mri_surf2vol --surfval /sub1/surf/lh.thickness.fwhm0.fsaverage.mgh > --hemi lh --surf pialfs --volreg /sub1/register.dat --outvol ./ --template > /sub1/mri/orig.nii > the resluts are 256 volumes.Why this happen?Should the voulme be 1 file? > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
