If you have an example func of some kind, you can just run bbregister passing the example func with --mov. This will give you a register.dat file which can be used in mri_label2vol to map the subcortical seg into the function space. doug
On 04/28/2014 06:18 PM, Jones, Richard wrote: > I have T1 data that has been run through freesurfer and I want to > apply the subcortical parcellations from that analysis to some QSM > data. The mailing list and website refer to using reg-feat2anat but > this require an existing feat directory. If I make a "pseudo" feat > directory with my QSM data so that I can use reg-feat2anat does it > just need to contain the subfolder reg containing the the QSM data as > "example_func.nii" and the registration matrix from using FLIRT to > register the QSM data to MNI space as "example_func2standard.mat", or > is there something else that needs to be included? > > Thanks, > > Richard > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
