Hi Stefano

you can use either mri_binarize --match or mri_extract_label with labels 10 and 49 (which I got from FreeSurferColorLUT.txt)

cheers
Bruce
On Tue, 29 Apr 2014, std...@virgilio.it wrote:

Hi list,
I'd like obtain FS thalami mask (nii.gz) to import in FSL and use it as seed
mask in probtrackx.

Thanks,


Stefano 

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