Hi Maia
it's hard to know from just these images, but I wonder whether the high
background noise level at the top of the image is messing up 5.1. You
might try cropping that out and seeing if things get better.
cheers
Bruce
On Fri, 25 Apr
2014, Maia Pujara wrote:
Hi all,
After running 200+ subjects through recon-all using version 5.1, all but 30
came back with complete surfaces. The 30 that failed seem to have the same
problem with normalization.
After re-running these 30 subjects with v5.3, we were able to get a good
quality brainmask.mgz output, which was not the case when we ran these
subjects through v5.1. See attached for comparisons of v5.1 and v5.3
outputs.
Would we need to be adding additional flags to get 5.1 to produce usable
results for these subjects? Or might there be some other workaround for
this?
Thanks in advance!
Maia
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