Hi, I am still having some concerns using mri_convert on Skyra volumes that I'm hoping can please be addressed.
On this occasion I have used mri_convert to convert a single dicom file to nifti from a volume collected on a siemens Skyra scanner using Freesurfer5.3 on CentOS5.7. When viewing this nifti image using tkmedit it appears 'cut-up' over many sagittal slices (please see attached) rather than the whole image appearing on one plane. Not sure if this is an issue with tkmedit or mri_convert? This problem persists if i convert the entire volume, with this 'cutting' appearing as vertical lines in the image. This is also the case when using the new mri_convert patch for OS X. Lastly, I can upload a dicom file if needed. Thanks, Paul
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