I use « recon-all -debug -s 001 -autorecon-all » and after « mri_label2vol --seg aseg.mgz --temp rawavg.mgz --o 001_rawavg.mgz --regheader aseg.mgz » Where can I specify "-cw256" ?
----Messaggio originale---- Da: fis...@nmr.mgh.harvard.edu Data: 9-apr-2014 16.56 A: "Andrea Tateo"<andrea.ta...@virgilio.it> Cc: "Freesurfer support list"<freesurfer@nmr.mgh.harvard.edu> Ogg: Re: R: Re: [Freesurfer] Problem of size Hi Andrea will it fit in 256? You can try specifying -cw256 cheers Bruce On Wed, 9 Apr 2014, Andrea Tateo wrote: > > Hi Bruce, > > thanks for the quick response. > > I report the full error message: > > > WARNING==================++++++++++++++++++++++++================================= > ====== > The physical sizes are (256.00 mm, 256.00 mm, 312.00 mm), which cannot fit > in 256^3 mm^3 volume. > The resulting volume will have 312 slices. > If you find problems, please let us know (freesurfer@nmr.mgh.harvard.edu). > ==================================================++++++++++++++++++++++++= > ============== > > $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ > reading > from/lustre/home/tateo/Simulazione_FREESURF_GRID_2/Segmentazione/SUB_1006_3/001 > /mri/rawavg.mgz... > TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 > i_ras = (-1, 0, -0) > j_ras = (0, 0, -1) > k_ras = (-0, 1, -0) > Original Data has (1, 1, 1) mm size and (256, 256, 312) voxels. > Data is conformed to 1 mm size and 312 voxels for all directions > changing data type from float to uchar (noscale = 0)... > MRIchangeType: Building histogram > Reslicing using trilinear interpolation > writing > to/lustre/home/tateo/Simulazione_FREESURF_GRID_2/Segmentazione/SUB_1006_3/001 > /mri/orig.mgz... > > **************************************** > ERROR! FOV=312.000 > 256 > Include the flag -cw256 with recon-all! > > > Thank you very much > > Andrea > > > > > > > ----Messaggio originale---- > Da: fis...@nmr.mgh.harvard.edu > Data: 9-apr-2014 14.45 > A: "Andrea Tateo"<andrea.ta...@virgilio.it>, "Freesurfer support > list"<freesurfer@nmr.mgh.harvard.edu> > Ogg: Re: [Freesurfer] Problem of size > > Hi Andrea > > what size are your voxels? Do you really need an FOV that big? If not, > you could extract the central 256mm using mri_extract. And I believe this > is just a warning - does recon-all complete? > > cheers > Bruce > > > > On Wed, 9 Apr 2014, > Andrea Tateo wrote: > > > > > Hi FreeSurfer expert, > > > > I have a problem with command "recon-all". > > > > In recon-all.log I can read: > > > > «The physical sizes are (256.00 mm, 256.00 mm, 312.00 mm), which cannot > fit > > in 256^3 mm^3 volume. > > > > The resulting volume will have 312 slices. > > > > If you find problems, please let us know > (freesurfer@nmr.mgh.harvard.edu).» > > > > I hope are there anyone to help me. > > > > Thank for your help. > > > > Andrea > > > > > > > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
