Unfortunately that is no option for me.
On Fri, 04 Apr 2014 15:33:47 -0400 Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > > Don't use --projopt and it won't segfault > > On 04/03/2014 02:08 AM, Joerg Pfannmoeller wrote: > > The command is: > > > > mri_vol2surf --mov /.../f001.nii --reg /.../register.f1.dof6.dat > > --trgsubject subjid --interp nearest --projopt /.../map001 --hemi rh --o > > /.../f001_surf.nii --noreshape --cortex > > > > The output is the follwoing: > > > > > > srcvol = /.../f001.nii > > srcreg = /.../register.f001.dof6.dat > > srcregold = 0 > > srcwarp unspecified > > surf = white > > hemi = rh > > trgsubject = subjid > > surfreg = sphere.reg > > reshape = 0 > > interp = nearest > > float2int = round > > GetProjMax = 0 > > INFO: float2int code = 0 > > INFO: changing type to float > > Done loading volume > > Loading label /.../label/rh.cortex.label > > Reading surface /.../surf/rh.white > > Done reading source surface > > Reading thickness /.../surf/rh.thickness > > Done > > Mapping Source Volume onto Source Subject Surface > > reading gm volume fraction from /.../map001.gm.mgz > > reading wm volume fraction from /.../map001.wm.mgz > > reading csf volume fraction from /.../map001.csf.mgz > > mri_vol2surf --mov /.../f001.nii --reg /.../register.f1.dof6.dat > > --trgsubject subjid --interp nearest --projopt /.../map001 --hemi rh --o > > /.../f001_surf.nii --noreshape --cortex: Segmentation fault > > > > Do you have an idea about the cause of the error? > > > > > > > > > > > > On Wed, 02 Apr 2014 17:28:14 -0400 > > Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > > > >> what is your command line that is seg faulting? What is the terminal > >> output? > >> > >> On 04/02/2014 05:17 PM, pfannmo...@uni-greifswald.de wrote: > >>> Please help me with this issue: > >>> > >>> If I apply mri_surf2vol to a single volume of unprocessed epi-data, it > >>> results in a segmentation fault. It works if I apply mri_vol2vol for > >>> registration of epi and anatomy, but than an interpolation is > >>> involved. I would like to avoid the interpolation and apply > >>> mri_surf2vol directly to the unprocessed data in order to minimize the > >>> number of interpolations. > >>> > >>> > >>> At Wednesday, 02-04-2014 on 21:08 Douglas N Greve wrote: > >>> > >>> This is something BF added Sept 1 2009: > >>> > >>> added --projopt switch to do optimal linear estimation of gray > >>> matter > >>> values given a set of precomputed gray matter densities. > >>> > >>> I don't know what it would mean beyond that > >>> > >>> doug > >>> > >>> > >>> On 04/02/2014 10:49 AM, Joerg Pfannmoeller wrote: > >>> > Hello, > >>> > > >>> > I found an option in mri_vol2surf for which I could not find a > >>> documentation. The option is called: > >>> > > >>> > --projopt > >>> > > >>> > It would be nice if somebody could give a description of this > >>> option. > >>> > > >>> > Respectfully yours > >>> > > >>> > pfannmoe > >>> > > >>> > > >>> > _______________________________________________ > >>> > Freesurfer mailing list > >>> > Freesurfer@nmr.mgh.harvard.edu > >>> <mailto:Freesurfer@nmr.mgh.harvard.edu> > >>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >>> > > >>> > > >>> > >>> -- > >>> Douglas N. Greve, Ph.D. > >>> MGH-NMR Center > >>> gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > >>> Phone Number: 617-724-2358 > >>> Fax: 617-726-7422 > >>> > >>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > >>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > >>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html > >>> Outgoing: > >>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > >>> > >>> _______________________________________________ > >>> Freesurfer mailing list > >>> Freesurfer@nmr.mgh.harvard.edu > >>> <mailto:Freesurfer@nmr.mgh.harvard.edu> > >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >>> > >>> > >>> The information in this e-mail is intended only for the person to > >>> whom it is > >>> addressed. If you believe this e-mail was sent to you in error and > >>> the e-mail > >>> contains patient information, please contact the Partners > >>> Compliance HelpLine at > >>> http://www.partners.org/complianceline . If the e-mail was sent to > >>> you in error > >>> but does not contain patient information, please contact the > >>> sender and properly > >>> dispose of the e-mail. > >>> > >>> > >>> > >>> _______________________________________________ > >>> Freesurfer mailing list > >>> Freesurfer@nmr.mgh.harvard.edu > >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> -- > >> Douglas N. Greve, Ph.D. > >> MGH-NMR Center > >> gr...@nmr.mgh.harvard.edu > >> Phone Number: 617-724-2358 > >> Fax: 617-726-7422 > >> > >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html > >> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > >> > >> _______________________________________________ > >> Freesurfer mailing list > >> Freesurfer@nmr.mgh.harvard.edu > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
