Oh yes, /Applications/freesurfer/subjects/bert/label/aparc.annot.ctab
On Tue, Mar 25, 2014 at 11:35 AM, Douglas N Greve <gr...@nmr.mgh.harvard.edu > wrote: > does that file exist? > On 03/25/2014 10:04 AM, Carl Anderson wrote: > > Dear list, > > I tried runing the example in mris_label2annot's help: > > > > mris_label2annot --s bert --h lh --ctab aparc.annot.ctab --a myaparc > > --l lh.unknown.label --l lh.bankssts.label --l > > lh.caudalanteriorcingulate.label --nhits nhits.mgh > > > > got the following result: > > > > ERROR: cannot find or read aparc.annot.ctab > > > > aparc.annot.ctab is in bert and here is my setup: > > > > -------- freesurfer-Darwin-snowleopard-i686-stable-pub-v5.3.0 -------- > > Setting up environment for FreeSurfer/FS-FAST (and FSL) > > FREESURFER_HOME /Applications/freesurfer > > FSFAST_HOME /Applications/freesurfer/fsfast > > FSF_OUTPUT_FORMAT nii.gz > > SUBJECTS_DIR /Applications/freesurfer/subjects > > MNI_DIR /Applications/freesurfer/mni > > FSL_DIR /usr/local/fsl > > > > could this be a bash vs tcsh problem as I am using bash? > > > > -- > > <<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>> > > Carl M. Anderson, Ph.D. (mail stop 204) > > Assistant Professor of Psychiatry, > > Harvard Medical School & > > The Neuroimaging Center, > > McLean Hospital 115 Mill St. Belmont, MA 02478 > > Ph: 617-855-2972; Fax: 617-855-2770 > > e-mail: remfr...@gmail.com <mailto:remfr...@gmail.com>; > > carl_ander...@hms.harvard.edu <mailto:carl_ander...@hms.harvard.edu> > > <<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>> > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- <<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>> Carl M. Anderson, Ph.D. (mail stop 204) Assistant Professor of Psychiatry, Harvard Medical School & The Neuroimaging Center, McLean Hospital 115 Mill St. Belmont, MA 02478 Ph: 617-855-2972; Fax: 617-855-2770 e-mail: remfr...@gmail.com; carl_ander...@hms.harvard.edu <<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>
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