Hi Francesco,
This wiki page has pretty good definitions for the morphometry 
stats.  Let us know if you want to clarify anything though.

https://surfer.nmr.mgh.harvard.edu/fswiki/MorphometryStats

-Louis

On Tue, 25 Mar 2014, Francesco Puccettone wrote:

> Hello,
> 
> I've read that cortical thickness analyses are limited to the cortex and 
> cannot be used to examine subcortical grey
> matter. But does "subcortical grey matter" refer to deep gray matter 
> structures such as the hippocampus, the basal
> ganglia or the nucleus accumbens - all of which are still technically part of 
> the "cerebral cortex" - or does it in
> fact refer to gray matter nuclei surrounded by white matter, for which it 
> would not be possible to model a white & a
> pial surface?
> 
> Thank you!
> Francesco
> 
>
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