Can you verify that the label does actually have label points in it?
Just open it in a text editor or cat it to a terminal. If it does have
points, send it to me. Also let me know which version of FS you are running.
doug
On 3/17/14 5:35 PM, Rupa Sabbineni wrote:
muen223-105-dhcp:subjects rupasabbineni$ mris_anatomical_stats -l
new.label -a aparc.a2009s.annot -log outSUB1_lhVOL2 SUB1 lh
limiting computations to label
/Volumes/DISK/Software/freesurfer/subjects/qdec/Results/new.label.
computing statistics for each annotation in aparc.a2009s.annot.
outputting results to outSUB1_lhVOL2...
reading volume
/Volumes/DISK/Software/freesurfer/subjects/SUB1/mri/wm.mgz...
reading input surface
/Volumes/DISK/Software/freesurfer/subjects/SUB1/surf/lh.white...
reading input pial surface
/Volumes/DISK/Software/freesurfer/subjects/SUB1/surf/lh.pial...
reading input white surface
/Volumes/DISK/Software/freesurfer/subjects/SUB1/surf/lh.white...
reading colortable from annotation file...
colortable with 76 entries read (originally
/autofs/space/birn_044/users/christophe_atlas_rebuild//scripts_2008/Simple_surface_labels2009.txt)
Segmentation fault: 11
On Mon, Mar 17, 2014 at 11:54 AM, Rupa Sabbineni <asabbin...@mrn.org
<mailto:asabbin...@mrn.org>> wrote:
Good morning!
I was trying to run the mris_anatomical_stats command and for some
subjects I keep getting Segmentation fault:11 error.
Some of the posts in the archive suggested that I run the
recon-all command since it usually means that subjects surfaces
are out of sync SO I RERAN RECON_ALL(which created the stats).
Then I reran the mris_anatomical_stats command and got the
segmentation fault again.
The command im using is
mris_anatomical_stats -l new.label -a aparc.a2009s.annot -log
outSUB1_lhVOL2 SUB1 lh
A little background on the new.label. We got the label by doing a
regression in qdec at FDR 0.05 which created cluster and peak
cluster label.
Can anyone please provide me some insight on how to trouble shoot
this problem?
Thank you!
Rupa
--
Rupa
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