muen223-105-dhcp:subjects rupasabbineni$ mris_anatomical_stats -l new.label -a aparc.a2009s.annot -log outSUB1_lhVOL2 SUB1 lh limiting computations to label /Volumes/DISK/Software/freesurfer/subjects/qdec/Results/new.label. computing statistics for each annotation in aparc.a2009s.annot. outputting results to outSUB1_lhVOL2... reading volume /Volumes/DISK/Software/freesurfer/subjects/SUB1/mri/wm.mgz... reading input surface /Volumes/DISK/Software/freesurfer/subjects/SUB1/surf/lh.white... reading input pial surface /Volumes/DISK/Software/freesurfer/subjects/SUB1/surf/lh.pial... reading input white surface /Volumes/DISK/Software/freesurfer/subjects/SUB1/surf/lh.white... reading colortable from annotation file... colortable with 76 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild//scripts_2008/Simple_surface_labels2009.txt) Segmentation fault: 11
On Mon, Mar 17, 2014 at 11:54 AM, Rupa Sabbineni <asabbin...@mrn.org> wrote: > Good morning! > > > I was trying to run the mris_anatomical_stats command and for some > subjects I keep getting Segmentation fault:11 error. > > Some of the posts in the archive suggested that I run the recon-all > command since it usually means that subjects surfaces are out of sync SO I > RERAN RECON_ALL(which created the stats). Then I reran > the mris_anatomical_stats command and got the segmentation fault again. > > > The command im using is > > mris_anatomical_stats -l new.label -a aparc.a2009s.annot -log > outSUB1_lhVOL2 SUB1 lh > > > A little background on the new.label. We got the label by doing a > regression in qdec at FDR 0.05 which created cluster and peak cluster label. > > > Can anyone please provide me some insight on how to trouble shoot this > problem? > > Thank you! > > Rupa > -- Rupa
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