Can you give more details? What is LECN_...nii? Where did it come from? What space is it in? MNI152 I assume? What does it mean you can't load it? Load it with what? What is your command line? doug
On 03/13/2014 01:36 PM, Barbara Weiland wrote: > Hi - > > I am trying to extract volumes & thickness stats of networks and > followed the commands from the post in the subject line to create > network .nii files in each subject's space. Based on some other > postings, I thought I needed to first move the volumes to surf for > each hemisphere, i.e.: > > mri_vol2surf --src $SUBJECTS_DIR/[subj]/label/LECN_subjXXX.nii > --out $SUBJECTS_DIR/[subj]/label/LECN_subjXXX_lh_surf.mgh > --srcreg $SUBJECTS_DIR/[subj]/mri/transforms/reg.mni152.2.dat --hemi lh > But this does not seem to create the surf correctly - I am unable to load it. > I have also tried to use mri_cor2labels to create labels directly front the > .nii files but found that the first column in the label files were all -1 > (which I found in a previous posting meant the volumes needed to be moved to > surface first as I tried above)?? > I ultimately want to use mris_aatomical_stats with these labels to output > stats. Any help would be appreciated, > thanks, > Barbara > > Barbara Weiland, Ph.D. > Research Asst. Professor > CU Change Lab > Dept. of Psychology & Neuroscience > University of Colorado Boulder > barbara.weil...@colorado.edu <mailto:barbara.weil...@colorado.edu> > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
