try mri_segstats --label-thresh .5 --label BV20 lh V1.thresh.label --i $SUBJECTS_DIR/BV20/surf/lh.pial_lgi --sum lh.V1.thresh.label.stats
On 03/05/2014 11:15 AM, krista kelly wrote: > Hello, > > I would like to extract the pial_lgi data from Freesurfer's V1.thresh > labels but can't quite figure it out. I've tried adapting the commands > from the LGI Freesurfer tutorial as such: > > mri_segstats --label-thresh BV20 lh V1.thresh.label --i > $SUBJECTS_DIR/BV20/surf/lh.pial_lgi --sum lh.V1.thresh.label.stats > > I've also tried > > mris_anatomical_stats -l lh.V1.thresh.label -f > BV20/stats/lh.V1.thresh.label.stats BV20 lh pial_lgi > > but I've had no luck with either. > > I would appreciate any help! > > Thanks, > Krista > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
