Hello, I would like to extract the pial_lgi data from Freesurfer's V1.thresh labels but can't quite figure it out. I've tried adapting the commands from the LGI Freesurfer tutorial as such:
mri_segstats --label-thresh BV20 lh V1.thresh.label --i $SUBJECTS_DIR/BV20/surf/lh.pial_lgi --sum lh.V1.thresh.label.stats I've also tried mris_anatomical_stats -l lh.V1.thresh.label -f BV20/stats/lh.V1.thresh.label.stats BV20 lh pial_lgi but I've had no luck with either. I would appreciate any help! Thanks, Krista
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