Hi doug and Ruopeng,
Thanks doug.
The command you sent did show something on the surface, but the button of "show
time course" can not be clicked.
Thanks doug and ruopeng.
All the best.
Rujing Zha
2014-02-27
charujing123
发件人：Douglas Greve <gr...@nmr.mgh.harvard.edu>
发送时间：2014-02-27 11:13
主题：Re: [Freesurfer] time course in mri_info lh.gender_age.thickness.10.mgh
收件人："freesurfer"<freesurfer@nmr.mgh.harvard.edu>,"Ruopeng
Wang"<rpw...@nmr.mgh.harvard.edu>
抄送：
That command definitely will not work. When you ran the command I sent, did it
at least show you something on the surface?
Ruopeng, is there a way to load a surface-based timecourse in freeview?
doug
On 2/26/14 9:11 PM, charujing123 wrote:
Hi doug,
Thanks doug.
I am sorry to describe my question no very clearly.It did work,but I want to
view time course of lh.score.thickness.00.mgh vertex by vertex. So I need to
try -v option to view time course manually as you just told me. However I
cannot view anything but darkness when I try ""freeview -v
lh.score.thickness.00.mgh"". Is there any tool or method to present a time
course window(or a colume of numbers) when I click one voxel or vertex. And
numbers in time course window will change when I click other voxel or vertex.
Thanks,
All the best.
Rujing Zha
2014-02-27
charujing123
发件人：Douglas N Greve <gr...@nmr.mgh.harvard.edu>
发送时间：2014-02-27 01:51
主题：Re: [Freesurfer] time course in mri_info lh.gender_age.thickness.10.mgh
收件人："freesurfer"<freesurfer@nmr.mgh.harvard.edu>
抄送：
Try this
freeview -f
$SUBJECTS_DIR/fsaverage/surf/lh.inflated:overlay=$SUBJECTS_DIR/glm/lh.score.thickness.00.mgh
Don't use -v in this case because -v is for a volumes and volume
overlays and all your data are surface overlays
On 02/25/2014 08:38 PM, charujing123 wrote:
> Hi doug and others,
> It will be highly appreciated,if anyone can help me.
> Thanks.
> All the best.
> Rujing Zhas
> 2014-02-26
> ------------------------------------------------------------------------
> charujing123
> ------------------------------------------------------------------------
> *发件人：*"charujing123"<charujing...@163.com>
> *发送时间：*2014-02-25 12:01
> *主题：*Re: [Freesurfer] time course in mri_info
> lh.gender_age.thickness.10.mgh
> *收件人：*"freesurfer@nmr.mgh.harvard.edu"<freesurfer@nmr.mgh.harvard.edu>
> *抄送：*
> Hi doug,
> When I try to do this by "freeview -f
> $SUBJECTS_DIR/fsaverage/surf/lh.inflated:overlay=$SUBJECTS_DIR/glm/lh.score.thickness.00.mgh
>
> -v lh.score.thickness.00.mgh" or "freeview -v
> lh.score.thickness.00.mgh", it did create a window of time course.
> However there is nothing in the freeview window except
> darkness((i.e.fig1 in the attachment)). By the way, I can see
> something by "freeview -f
> $SUBJECTS_DIR/fsaverage/surf/lh.inflated:overlay=$SUBJECTS_DIR/glm/lh.score.thickness.00.mgh"(i.e.fig2
>
> in the attachment). All of these can be got in the attachment.
> Thanks.
> All the best.
> Rujing Zha
> 2014-02-25
> ------------------------------------------------------------------------
> charujing123
> ------------------------------------------------------------------------
> *发件人：*"charujing123"<charujing...@163.com>
> *发送时间：*2014-02-25 10:28
> *主题：*Re: [Freesurfer] time course in mri_info
> lh.gender_age.thickness.10.mgh
> *收件人：*"freesurfer@nmr.mgh.harvard.edu"<freesurfer@nmr.mgh.harvard.edu>
> *抄送：*
> Thanks doug
> All the best.
> Rujing Zha
> 2014-02-25
> ------------------------------------------------------------------------
> charujing123
> ------------------------------------------------------------------------
> *发件 人：*Douglas N Greve <gr...@nmr.mgh.harvard.edu>
> *发送时间：*2014-02-25 00:31
> *主题：*Re: [Freesurfer] time course in mri_info
> lh.gender_age.thickness.10.mgh
> *收件 人：*"freesurfer"<freesurfer@nmr.mgh.harvard.edu>
> *抄送：*
> On 02/23/2014 08:32 PM, charujing123 wrote:
> > Hi all,
> > I have two questions.
> > 1,If I want to get the value of specific voxel from the
> > lh.gender_age.thickness.10.mgh, which code can I use to perform it?
> You can go to that vertex when you have it loaded into FreeView,
> otherwise you can load it into matlab (MRIread.m). Make sure to account
> for the fact that matlab uses 1-based indices whereas FS uses 0-based.
> > 2,How to graph the time course of specfic voxel from the
> > lh.gender_age.thickness.10.mgh by freeview?
> Add "-v lh.gender_age.thickness.10.mgh" to your freeview command line
> > Thanks.
> > All the best.
> > Rujing Zha
> > 2014-02-24
> >
> ------------------------------------------------------------------------
> > charujing123
> >
> >
> > _______________________________________________
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> gr...@nmr.mgh.harvard.edu
> Phone Number: 617-724-2358
> Fax: 617-726-7422
> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
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> The information in this e-mail is intended only for the person to whom
> it is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
_______________________________________________
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https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
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https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
