I commented out the mni_template command and all went good, Thank you so
much for the help
2013/12/18 Anastasia Yendiki <ayend...@nmr.mgh.harvard.edu>
>
> Ciao Francesco - The problem is that the pre-processing encountered an
> error, so parts of it didn't actually complete:
>
> Image Exception : #22 :: ERROR: Could not open image /path/to/mni_template
> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
>
> You can comment out that line on your configuration file so that it'll
> find the default template. You don't need to repeat any pre-processing
> steps before the inter-subject registration (see wiki page for how to turn
> off steps). You also don't need to rerun bedpost.
>
> Hope this helps,
> a.y
>
>
> On Wed, 18 Dec 2013, Francesco Baldacchini wrote:
>
> Ciao Anastasia,
>> Here is the log file you requested. Thanks
>>
>> Francesco Baldacchini
>>
>>
>> 2013/12/17 Anastasia Yendiki <ayend...@nmr.mgh.harvard.edu>
>>
>> Hi Francesco - Can you please send us your tracula log file,
>> from scripts/trac-all.log? It's impossible to guess what went
>> wrong without seeing the log file.
>>
>> Thanks,
>> a.y
>>
>> On Tue, 17 Dec 2013, Francesco Baldacchini wrote:
>>
>> Hi everybody,
>>
>> I'm having problems running the trac-all -path
>> command. It's giving me this
>> error:
>>
>> Segmentation fault (core dumped)
>> Linux opbg 3.11.0-15-generic #23-Ubuntu SMP Mon Dec
>> 9 18:17:04 UTC 2013
>> x86_64 x86_64 x86_64 GNU/Linux
>>
>> trac-paths exited with ERRORS at mar 17 dic 2013,
>> 16.09.33, CET
>>
>> I searched but it seems I'm the only one getting
>> this error. To give you
>> more information I can show you how the trac-all
>> -bedp command ended, to me
>> it seems without error:
>>
>> 59 slices processed
>> 61 slices processed
>> Queuing post processing stage
>> /usr/local/freesurfer/bin/bedpostx_mgh: line 439:
>> 5294
>> Terminated
>> ${subjdir}.bedpostX/monitor
>>
>> In attachment I loaded my drirc.tutorial
>> configuration file. Thanks,
>>
>> Francesco Baldacchini
>>
>>
>>
>>
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