Hello Emad, Considering your output when you run this from the source command generates only the first subject in your list, I would check to see if there is a looping issue. Because you are no longer within the same directory as when you ran it from the terminal, the script may not be returning to the same homedir. I would add in a CD command as the last line of your for loop and see if that fixed the problem.
I hope this helps, Jacob > Hello, > > I am having a tcsh scripting problem for generating a text file containing > the list of subjects, and I would appreciate any help. I've explained my > problem here: > > http://stackoverflow.com/q/20617206/2769441 > > All the best, > Emad > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
