Hi list, I am trying to visualize a .nii ROI coming from MEG, which is in Colin27 space.
I can visualize it perfectly in mricron and tkmedit with the following command: tkmedit -f path/to/spm8/canonical/single_subj_T1.nii -overlay MEG_ROI.nii -fthresh 0.5 (single_subj_T1.nii is Colin27) but when I visualize it with: tkmedit Colin T1.mgz -overlay ./rC_vs_D_band1_0.01_left.nii -overlay-reg /home/glerma/glerma/GIT/bcblscripts/FREESURFER/ROI/Mikel_SingleSubject_to_Colin.dat -fthresh 0.5 -surface lh.white -aux-surface rh.white The result is wrong, and different from the first tkmedit. Should I convert the MEG_ROI.nii ni some specific way to make it work? Any suggestions? Thanks, Gari The registration matrix between single_subj_T1.nii and Colin27 is the following one: Colin 2.000000 2.000000 0.150000 9.999982714653015e-01 -1.096551306545734e-03 -1.517703873105347e-03 5.575752854347229e-01 1.516161020845175e-03 -1.406581024639308e-03 9.999977946281433e-01 -1.579373359680176e+00 -1.098683569580317e-03 -9.999984502792358e-01 -1.404915703460574e-03 6.750410795211792e-01 0 0 0 1 round (obtained with: bbregister --s Colin --mov path/to/spm8/canonical/single_subj_T1.nii --init-spm --reg from_SingleSubject_to_Colin.dat --t1 )
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