Hi Ruth - Glad to hear this is useful to you. The rotation and translation parameters are extracted from the affine registration of each DWI volume to the first volume, which in trac-all is performed by eddy_correct.
a.y On Tue, 10 Dec 2013, Ruth Carper wrote:
Hi Anastasia, We discussed your paper at our lab meeting yesterday so this was perfect timing on the release of motion measures in your updated TRACULA. But I wasn't clear where the numbers are coming from in your new update. Is this from EDDY? eddy_correct? Some other registration step? Thanks, Ruth
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