which file did you look in? It should have a name like cache.th20.abs.y.ocn.dat
On 12/09/2013 05:09 PM, Jon Wieser wrote: > I found data for the average thickness all subjects for each cluster, but I > haven't found the individual subject's thickness for each cluster. can you > direct me to that data? > Jon > ----- Original Message ----- > From: "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> > To: "Jon Wieser" <wie...@uwm.edu> > Cc: "freesurfer" <freesurfer@nmr.mgh.harvard.edu> > Sent: Monday, December 9, 2013 2:15:39 PM > Subject: Re: [Freesurfer] qdec analysis with 2 covariates > > It is in one of the output files. Look for the .dat file in > mri_glmfit-sim --help > > On 12/09/2013 03:01 PM, Jon Wieser wrote: >> thanks doug, >> >> We've run a 2x2 analysis for thickness in Qdec and want the get the average >> thickness value for each cluster, for each subject. >> How can i get a table of thickness data , for feach subject in the analysis >> Jon >> >> ----- Original Message ----- >> From: "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> >> To: freesurfer@nmr.mgh.harvard.edu >> Sent: Monday, December 9, 2013 1:48:15 PM >> Subject: Re: [Freesurfer] qdec analysis with 2 covariates >> >> >> Hi Jon, QDEC does not currently allow more than one covariates of >> interest. You will have to use the command-line stream (ie, >> mris_preproc, mri_surf2surf, mri_glmfit, mri_glmfit-sim) >> >> doug >> >> >> On 12/05/2013 02:57 PM, Jon Wieser wrote: >>> HI freesurfer experts >>> >>> I want to do an analysis in qdec with 2 groups(ADHD, and Marijuana usage) >>> and 2 covariates(age and gender) to study the effect of these factors on >>> cortical thickness. I can only select a covariate in the qdec gui. is >>> there a way to select both covariates in the qdec GUI? >>> Thanks >>> Jon >>> -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
