Dear Freesurfer experts, I've run the following command to pull out mean, stdev etc. for the left and right NAcc area from a COPE (condition1-condition2) for each of my participants:
mri_segstats --seg subj.feat/reg/freesurfer/aseg.nii.gz \ --id 26 58 --nonempty --ctab-default \ --i subj.feat/stats/cope1.nii.gz --sum subj.segstats.dat When I then try to merge the resulting .dat files (which contain the information I want) into a table using the following command, only left and right NAcc volume appears and the summary measures I'm interested in (mean stdev, etc.) don't: asegstats2table --input (paths to all of the individual .dat files) --tablefile ROI.vol.table If anyone can tell me where I've gone wrong, it would be greatly appreciated! Thanks, Greg _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
