Many Thanks Doug. Will try that out. Regards Koushik
-----Original Message----- From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve Sent: Monday, November 04, 2013 4:47 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mri_surf2vol questions To get them both in one file, run mri_surf2vol to get the left hemisphere. When you run it a 2nd time for the right hemisphere add "--merge vol.lh.nii". I think FSL has software to swap dimensions doug On 11/04/2013 09:53 AM, Govindarajan, Koushik Athreya wrote: > > Hello Freesurfers, > > I am trying to use mri_surf2vol to convert my thickness > files into analyze/nifty format to use with a custom code. Is there a > way I can write all output files from mri_surf2vol in axial format? > Also, is there a way in FreeSurfer to combine these thickness files > from both hemispheres? > > Thanks in advance > > Koushik > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://urldefense.proofpoint.com/v1/url?u=https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer&k=yYSsEqip9%2FcIjLHUhVwIqA%3D%3D%0A&r=4ebx%2BU4XzNnu4XA8t53Lt0n%2FTCuxbfN4Z1deUmAFsLg%3D%0A&m=eXIoMEBlG%2B8lbZjsb1YJ%2F97BRy1MUZ1WctYdgZh5Sdg%3D%0A&s=96b6542c3c6b17014b36a8903d8ae263c3a8d1ecb34e7a7e94c6dda6816eade0 -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://urldefense.proofpoint.com/v1/url?u=https://gate.nmr.mgh.harvard.edu/filedrop2&k=yYSsEqip9%2FcIjLHUhVwIqA%3D%3D%0A&r=4ebx%2BU4XzNnu4XA8t53Lt0n%2FTCuxbfN4Z1deUmAFsLg%3D%0A&m=eXIoMEBlG%2B8lbZjsb1YJ%2F97BRy1MUZ1WctYdgZh5Sdg%3D%0A&s=1b6bada207fa43c4bd234bfaca1595235d9127992ebad10d07aeb9d0447e1159 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: https://urldefense.proofpoint.com/v1/url?u=ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/&k=yYSsEqip9%2FcIjLHUhVwIqA%3D%3D%0A&r=4ebx%2BU4XzNnu4XA8t53Lt0n%2FTCuxbfN4Z1deUmAFsLg%3D%0A&m=eXIoMEBlG%2B8lbZjsb1YJ%2F97BRy1MUZ1WctYdgZh5Sdg%3D%0A&s=b4d5b601eda7818d942370c7cfa222566b029638a5618732b0b2bc46de186c75 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://urldefense.proofpoint.com/v1/url?u=https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer&k=yYSsEqip9%2FcIjLHUhVwIqA%3D%3D%0A&r=4ebx%2BU4XzNnu4XA8t53Lt0n%2FTCuxbfN4Z1deUmAFsLg%3D%0A&m=eXIoMEBlG%2B8lbZjsb1YJ%2F97BRy1MUZ1WctYdgZh5Sdg%3D%0A&s=96b6542c3c6b17014b36a8903d8ae263c3a8d1ecb34e7a7e94c6dda6816eade0 The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at https://urldefense.proofpoint.com/v1/url?u=http://www.partners.org/complianceline&k=yYSsEqip9%2FcIjLHUhVwIqA%3D%3D%0A&r=4ebx%2BU4XzNnu4XA8t53Lt0n%2FTCuxbfN4Z1deUmAFsLg%3D%0A&m=eXIoMEBlG%2B8lbZjsb1YJ%2F97BRy1MUZ1WctYdgZh5Sdg%3D%0A&s=2eb8fed79f9aafdf0d0995288e2c9ab4242e46524428dcfe95ab7faa8ccb439d . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
