Hello, This morning I tried to get the segmentation measurement in table formate, but I got the following error message asegstats2table --subjects AB197.T0b AB232.T0a AD721.T0 --skip --meas volume --tablefile asegstats1.txt
Error message :SUBJECTS_DIR : /opt/freesurfer/subjects
Parsing the .stats files
Skipping /opt/freesurfer/subjects/AB197.T0b/stats/aseg.stats
Skipping /opt/freesurfer/subjects/AB232.T0a/stats/aseg.stats
Skipping /opt/freesurfer/subjects/AD721.T0/stats/aseg.stats
Building the table..
Traceback (most recent call last):
File "/opt/freesurfer/bin/asegstats2table", line 513, in <module>
rows, columns, table = sanitize_table(options, pretable)
File "/opt/freesurfer/bin/asegstats2table", line 412, in sanitize_table
_specs, _id_name_map, _measl = _t[0]
IndexError: list index out of range
Then tried asegstat2table for individual subjects but for each subject the
computer gave following error message
Example:
asegstats2table --subjects AB232.T0a --meas volume --tablefile asegstats1.txt
SUBJECTS_DIR : /opt/freesurfer/subjects
Parsing the .stats files
ERROR: The stats file /opt/freesurfer/subjects/AB232.T0a/stats/aseg.stats is
not found or is too small to be a valid statsfile
Use --skip flag to automatically skip bad stats files
I looked into each subjects' segmetation file (attached). It looked fine to me
and had all the information.
Please advise why I got error message.
Thanks,
Rashmi
aseg.stats
Description: aseg.stats
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