actually, you are right, they should have 45. Which one had 66? What was your command line? On 03/03/2014 04:22 PM, sabin khadka wrote: > All aseg.stats seems to have volume of 45 ROIs with some > hypointensities value =0. Also, I checked aseg.mgz and looks fine with > these subjects. I extracted values with asegstats2table with --all-seg > flag. I hope that is okay? > > > On Sunday, March 2, 2014 11:28 AM, Douglas Greve > <gr...@nmr.mgh.harvard.edu> wrote: > > That means that it was expecting to find 66 segmentations but only > found 55. Sometimes there are some segmentations in one subject that > are not in another (usually hypointensities). But 11 is too many. Have > you looked at the aseg to see if it looks right? You can also compare > the aseg.stats file to see which segs are missing. > doug > > > On 3/2/14 9:46 AM, sabin khadka wrote: >> Hi all, >> While using asegstats2table, I got following error for few subjects, >> WARN SUBID: nmeasure 66, expecting 55 >> It let me extract cortical thickness and surface area using >> aparcstats2table though. >> Any suggestions? >> >> -SABIN >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom > it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you > in error > but does not contain patient information, please contact the sender > and properly > dispose of the e-mail. > >
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
