Sorry. I meant to do that.
---- Original Message ---- From: Bruce Fischl <fis...@nmr.mgh.harvard.edu> To: Arash Nazeri <arashnaz...@aol.com> Sent: Wed, Oct 23, 2013 8:25 am Subject: Re: [Freesurfer] Projecting voxel intensities to a surface file Hi Arash can you cc the list on this type of email so that others can answer? Particularly Matt Glasser! I suspect that they have already run bbregister, but I'm not sure. cheers Bruce On Wed, 23 Oct 2013, Arash Nazeri wrote: > Hi Bruce, > Thanks for your response. I think this will do the trick generally, is it > also possible to apply mri_vol2surf to the Human Connectome Project > preprocessed files, or should I rerun the recon-all? In the HCP dataset, the > surface files are in the gifti format and the diffusion images are already > registered to the structural volumes. Based on the documentations it seems > that mri_vol2surf is hard-wired for outputs generated from recon-all. > > Cheers, > Arash > > > > -----Original Message----- > From: Bruce Fischl <fis...@nmr.mgh.harvard.edu> > To: Arash Nazeri <arashnaz...@aol.com> > Cc: freesurfer <freesurfer@nmr.mgh.harvard.edu> > Sent: Tue, Oct 22, 2013 10:17 pm > Subject: Re: [Freesurfer] Projecting voxel intensities to a surface file > > Hi Arash > Yes. Register the surface to the volume with bbregister, then use > mri_vol2surf to do the sampling > Cheers > Bruce > > > > On Oct 22, 2013, at 12:13 PM, Arash Nazeri <arashnaz...@aol.com> wrote: > > Dear all, > I'm new to the freesurfer. I want to project surrounding cortical > voxel values (intensities) from a given map (e.g. mean diffusivity map > in a nifti format) to a surface file (e.g. mid-cortical surface in a > gifti fromat) to generate scalar maps like ?h.thickness for group-wise > statistics. Can this be carried out using freesurfer commands? > > Cheers, > Arash > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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