Hi Emily - You're using "*" to specify all the dicom files in the series. You should specify just one file.
BTW, do you have the latest version of freesurfer and the tutorials? This dmrirc looks like it might have been adapted from an older version of the tutorials. If so, I highly recommend downloading the latest version of everything. Hope this helps, a.y On Mon, 21 Oct 2013, ebell...@uwm.edu wrote: > Hello, > > I am running into the following error when I try to run trac-all: > > set: No match. > ERROR: must specify as many DWI dicoms as subjects > > I have taken my script and examined it line by line and have made several > attempts at debugging it. > > I was wondering if you had any suggestions? Attached is my > dmrirc_single_subject configuration. > > I am brand new to freesurfer and tracula and would appreciate any guidance > you can give me! > > Thanks! > > Emily > > ----- Original Message ----- > From: "Anastasia Yendiki" <ayend...@nmr.mgh.harvard.edu> > To: ebell...@uwm.edu > Cc: freesurfer@nmr.mgh.harvard.edu > Sent: Thursday, October 10, 2013 3:53:29 PM > Subject: Re: [Freesurfer] Tracula > > > Hi Emily - The first version of tracula was in freesurfer 5.1. However, I > would *highly* recommend using the newer version of tracula, now in 5.3, > as it has improvements in both performance and speed. > > The processing in trac-all is supposed to happen in parallel for each of > the subjects included in the configuration file, if you run trac-all on a > cluster. However, not all clusters have the same set-up, and you may have > to make modifications for it to work on your cluster, with the help of > your cluster admins. There should be previous questions on this in this > list's email archives. Let me know if you have any other questions. > > a.y > > On Thu, 10 Oct 2013, ebell...@uwm.edu wrote: > >> >> >> ----- Original Message ----- >> From: ebell...@uwm.edu >> To: freesurfer@nmr.mgh.harvard.edu >> Sent: Thursday, October 10, 2013 3:14:06 PM >> Subject: Tracula >> >> Hello, >> >> I had a question regarding batch processing in trac all. >> >> When you batch process and put in multiple subjects in your subject list in >> your configuration file, are the subjects run parallel or serial? >> >> Also, I am having a hard time finding the linux version of tracula that is >> compatible with Freesurfer version 5.0 (assuming it exists)? >> >> Thank you so much and I appreciate your guidance as I am brand new to >> freesurfer and tracula. >> >> Emily >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
