Hi Mike - I'll need to see the configuration file and trac-all.log.
Thanks, a.y On Mon, 21 Oct 2013, Michael Datko wrote:
Hello,I am running into a tracula error very early in the preprocessing steps. I have data that was already somewhat preprocessed (reconstruction, eddy correction and magnetic field inhomogeneity correction) that I'm trying to use as an input. I have turned off those steps in the tracula configuration file. Tracula seems to find these files and starts making a few of the dwi output files in the subject's freesurfer/dmri folder. However, it then says something about not having the correct "frames" and it can't find the file dwi_frames.nii.gz. I'm not sure what this error is referring to. I attempted to run the same subject's data from their raw dicoms instead of the slightly-preprocessed file and also ran into errors. If it makes a difference, the subject had recon-all performed with freesurfer version 5.0 and I am now using version 5.3. Perhaps the subject is missing some necessary recon-all output that is only created with 5.3? Any advice? Thanks, Mike Datko
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
