Hi Lucia - You can look at the tracula output over the cortical
parcellation and subcortical segmentation in the individual's diffusion
space like this:
freeview dmri/dtifit_FA.nii.gz
dlabel/diff/aparc+aseg.bbr.nii.gz:colormap=lut:opacity=.5 -tv
dpath/merged_avg33_mni_bbr.mgz
Hope this helps,
a.y
On Fri, 18 Oct 2013, Lucia Billeci wrote:
Dear Anastasia and all,
how can I understand which are the region of the brain in which the brain
base been parecellated that each tract generated by TRACULA connect?
For example if I look at the left uncinate fascicles how can I know which
are the ROIs of the statistical output from the cortical parcellation that
it connects?
Thanks
Lucia
On Oct 14, 2013, at 11:08 PM, Lucia Billeci wrote:
Hi Anastasia,
thanks for you answer. Now I have understood the meaning of that
parameter.
Best regards
Lucia
On Oct 14, 2013, at 10:58 PM, Anastasia Yendiki wrote:
Hi Lucia - It's how many sample paths were drawn to
produce the probability distribution of the path
(path.pd.nii.gz). It depends on the configuration
parameters (nsample, nkeep), so it'll be the same if these
configuration parameters are the same.
Hope this helps,
a.y
On Mon, 14 Oct 2013, Lucia Billeci wrote:
Dear all,
I noticed that in the TRACULA statistics
output files (pathstats.overall.txt) the
variable "Count" that
should indicate the number of sample paths in
the WM tract is the same for all the computed
tract. Could
anyone tell me why this happen?
Thanks a lot
Regards
Lucia
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
Dr. Lucia Billeci, PhD
Institute of Clinical Physiology (IFC)
National Research Council (CNR)
via Moruzzi 1, 56124, Pisa
ITALY
Tel: +39-0506213204
e-mail: lucia.bill...@ifc.cnr.it
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
The information in this e-mail is intended only for the
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Dr. Lucia Billeci, PhD, Engineer
National Research Council of Italy (CNR)
Institute of Clinical Physiology (IFC)
via Moruzzi, 1 Pisa - Italy
http://www.ifc.cnr.it
Tel. +39-050-3152182 Cell. +39-339-1863902
Email: lucia.bill...@ifc.cnr.it
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contains patient information, please contact the Partners Compliance
HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you
in error
but does not contain patient information, please contact the sender
and properly
dispose of the e-mail.
Dr. Lucia Billeci, PhD, Engineer
National Research Council of Italy (CNR)
Institute of Clinical Physiology (IFC)
via Moruzzi, 1 Pisa - Italy
http://www.ifc.cnr.it
Tel. +39-050-3152182 Cell. +39-339-1863902
Email: lucia.bill...@ifc.cnr.it
_______________________________________________
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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
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