Hi Olof
what are the dimensions of the volumes that fail? If you upload one we will
take a look. Is it a display problem or is the volume actually cropped? Try
looking at the .mgz in different viewers (freeview, fslview) and see if it
is still an issue
cheers
Bruce
On Tue, 8 Oct 2013, Erik
Lindberg wrote:
Dear Freesurfer experts,
I analyzed a lot of brains in Freesurfer. For some reason some brains gets
cut on the top (see attaced image). I cannot understand why this is
happening. The dicom image is ok, but as soon as I convert it into mgz
suddenly the top of the brain is cut off.
Out of 60 brains with identical mri sequence 5 brains are cut.
Would be grateful if you suggest how to solve this problem
Thanks in advance!
Olof
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