Hello, I am currently having an issue getting my recon's to recognize multiple sets of control points. When I create a control point set, I make sure I select "control points", place them on the brainmask, and save them in the "tmp" folder as control.dat, control2.dat, control3.dat, etc.
I have been using the command recon-all -autorecon2 -autorecon3 -s Subject1 There does not seem to be a problem when I just have one set of control points. However, when I have multiple sets, I can see where control points have not been taken into account and have not altered the intensity of the voxels at all. I currently have them re-running with the command recon-all -autorecon2-cp -autorecon3 -s Subject1 to see if that makes a difference. However, as I said before, one set of control points was previousy effective simply using the command recon-all -autorecon2 -autorecon3 -s Subject1 Any ideas? Thanks, Francesco Francesco Siciliano, B.A. Research Assistant Department of Child and Adolescent Psychiatry The New York State Psychiatric Institute Columbia University 1051 Riverside Drive, Unit 74 New York, NY 10032 (212) 543-6155
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
