For FSL guide:
Normal
0
false
false
false
IT
JA
X-NONE
/* Style Definitions */
table.MsoNormalTable
{mso-style-name:"Table Normal";
mso-tstyle-rowband-size:0;
mso-tstyle-colband-size:0;
mso-style-noshow:yes;
mso-style-priority:99;
mso-style-parent:"";
mso-padding-alt:0cm 5.4pt 0cm 5.4pt;
mso-para-margin:0cm;
mso-para-margin-bottom:.0001pt;
mso-pagination:widow-orphan;
font-size:12.0pt;
font-family:Cambria;
mso-ascii-font-family:Cambria;
mso-ascii-theme-font:minor-latin;
mso-hansi-font-family:Cambria;
mso-hansi-theme-font:minor-latin;}
I should transforms a group of labels into a surface
Usage:
label2surf -s <surface> -o <outputsurface> -l
<labels>
Compulsory arguments (You MUST set one or more of):
-s,--surf input surface
-o,--out output surface
-l,--labels ascii list of
label files
Optional arguments (You may optionally specify one or more
of):
-v,--verbose switch on
diagnostic messages
-h,--help display this message
but I should create a lh/rh.frontal.label and use it for label2surf.With
mdi_binarize I can create .nii.gz but no .label. Is that correct?How I can do
it?
Thanks,
Stefano
----Messaggio originale----
Da: ayend...@nmr.mgh.harvard.edu
Data: 25-set-2013 17.49
A: <std...@virgilio.it>
Cc: <freesurfer@nmr.mgh.harvard.edu>
Ogg: Re: [Freesurfer] Import FS data to FSL
1 - Yes.
2 - You can use mri_aparc2aseg to grow the cortical labels into the white
matter (say, by 2mm). The file that it will produce will be a volume file,
so then you just run mri_binarize to extract specific labels. Make sure
you save them in nifti format for FSL.
On Wed, 25 Sep 2013, std...@virgilio.it wrote:
> Hi list,
>
> I have 2 questions, please.
>
> 1-The bedpostX that I have run for TRACULA could be used for PROBTRACKX
> (FSL)?
>
> 2-I'd like to export cortical masks from FS to FSL.
>
> An option is mri_binarize but this way failed in probtrackx (fsl).
> FSL list have advised me that I should use label2surf command to convert
> label to surface files.
>
> Where could find the .label (according to FreeSurferColorLUT.txt) to build
> mask of frontal, parietal, motor, sensor, temporal and occipital lobes?
>
> Do you have other ways that you advise me?
>
>
> Thanks,
>
>
> Stefano
>
>
>
>
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
