Thank you so much for your help. The fwhm of 0 and 5 both work. I was wondering if you knew of any references or sites I could reference to justify this level of smoothing.
Tara ----- Original Message ----- From: "Marie Schaer" <marie.sch...@unige.ch> To: "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> Cc: "Nick Schmansky" <ni...@nmr.mgh.harvard.edu>, freesurfer@nmr.mgh.harvard.edu Sent: Wednesday, September 4, 2013 10:36:14 AM Subject: Re: [Freesurfer] Monte Carlo Simulation in Qdec Hi Tara, You can try with fwhm=0 as Doug suggested, or 5 if it works. I'm still trying to see whether the level of fwhm could be modified in qdec so that you can input your own level (e.g. 1 or 2, instead of the specified 0-5-10-15-20-25). Nick, Do you know if there is a keyword that can be changed in .Qdecr to add different smoothing values to the FWHM menu in Qdec? Thanks! Marie On Sep 4, 2013, at 8:03 AM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > > Hi Tara, The problem is that the lGI is already very smooth and then it > gets smoothed again. This causes the total smoothness level to go beyond > what has been done for the simulation. Try using fwhm=0. > > doug > > > On 09/04/2013 09:48 AM, Tara Ann Miskovich wrote: >> Hello, >> >> I am conducting group analyses with LGI data in qdec, and I am having an >> issue with the monte carlo simulation I am hoping to get help with. >> >> Under design I leave the Smoothing (FWHM) at 10, and when I try to run the >> monte carlo simulation after running the analysis I get this error: Error in >> Monte Carlo simulation: Error running mri_surfcluster. Plus in the terminal >> I get an error: mri_surfclusterfwhm.dat: 37.226284, rounded to 38 Error: >> fwhm out-of-range (< 1 or > 30)! >> >> Should I be using fwhm0 for LGI data? >> >> Thank you for your help! >> >> Tara >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
