Hi Doug, thanks for the info. If I run isxconcat-sess with -m pcc, I get only a pcc file as output. Should I put this into mri_glmfit as --y pcc.nii, or should I re-run isxconcat-sess without -m pcc? Thanks again, Caspar
2013/9/23 Douglas N Greve <gr...@nmr.mgh.harvard.edu> > Hi Caspar, just use -m pcc in isxconcat-sess and continue as normal with > the group analysis > doug > > On 09/23/2013 09:50 AM, Caspar M. Schwiedrzik wrote: > > Hi Freesurfer Experts, > > I am trying to calculate group pcc maps for resting state functional > > connectivity analyses. Unfortunately, the walkthrough does not cover > > this. > > > > I found several posts regarding this on the mailing list, but I am not > > sure which one is the right way to go: > > > > There is -m pcc in isxconcat-sess > > ( > http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg30456.html) > > and there is also fast_glm_pcc (e.g., > > http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg22648.html > ), > > however, the various posts on the later functional all seem to differ > > in how to properly use it. > > > > This is in version 5.1. > > Please advise. > > Thanks, Caspar > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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