Hello again, It seems the issue was being caused by a change we had made to our director structure that did not account for a reference document to some of the outputs from earlier processing.
Thank you, Jacob > Hello Freesurfer experts, > > We are trying to run func2roi-sess in stable 3 (this command still exists > in stable 3). However, we get an error that says it can't find the > analysis.info file, even though it is definitely there (not to mention > that we previously ran this analysis for the same subjects using the same > command lines and it worked). > > Here is the exact series of commands used; for purposes of overwriting not > being an issue, I deleted the directory that had been created when we ran > this previously: > > cd /cluster/ablood/1/AdjustedParadigmFiles > > source /usr/local/freesurfer/nmr-stable3-env > > setenv SUBJECTS_DIR > /cluster/ablood/1/AdjustedParadigmFiles/Adjusted_recons > > func2roi-sess -roidef M6_LH_t6_0_sm5_0thresh -analysis > tap_lh_long_CD_R01BTX_ctrl1_sess1_sm5 -maskcontrast > tap_lh_long_CD_R01BTX_ctrl1_sess1_sm5_contrast -labelfile > /cluster/ablood/1/AdjustedParadigmFiles/Adjusted_recons/CD_R01BTX_ctrl1_sess1_recon/label/M6_LH_CD_R01BTX_ctrl1_sess1.label > > -maskthresh 6.0 -masktail pos -maskmap t -s CD_R01BTX_ctrl1_sess1 -df > sessdirfile > > And the readout is: > > func2roi-sess logfile is > /autofs/cluster/ablood/1/AdjustedParadigmFiles/log/func2roi-sess.log > ---------------------------------------------------------- > ERROR: cannot find tap_lh_long_CD_R01BTX_ctrl1_sess1_sm5/analysis.info > > We get this error on multiple machines using multiple peoples' accounts, > so I don't think there is a general error here somewhere... Please let us > know if you can figure out what may be going on; is there anything about > FSL settings that maybe needs to be specified since it's an old > environment? > > Thank you for the help! > Jacob > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
