OK. But, I have run a simple command (recon-all) for cortical parcellation.
I have already used this command for other structural images.This is the image features:data_type FLOAT32dim1 212dim2 320dim3 320dim4 1datatype 16pixdim1 0.8000000119pixdim2 0.8000000119pixdim3 0.8000000119pixdim4 0.0109999999cal_max 0.0000cal_min 0.0000file_type NIFTI-1+ Thanks, Stefano ----Messaggio originale---- Da: rudo...@nmr.mgh.harvard.edu Data: 12-set-2013 17.50 A: <std...@virgilio.it> Cc: <freesurfer@nmr.mgh.harvard.edu> Ogg: Re: R: Re: [Freesurfer] mris_calc erroe in recon-all The file 'lh.area' contains 126850 elements. The file 'lh.area.pial' contains 126355 elements. You cannot add them together since they have different sizes. On 9/12/13 11:14 , std...@virgilio.it wrote: > Thanks. > > These are the output > [iMac-di-Stefano:Con28/SUBJECTS_DIR/surf] Stefano% mris_calc lh.area stats > Size [ 126850 ] > Min@(index) [ -0.322716 > (56402) ] > Max@(index) [ 12.367171 > (123284) ] > Mean [ 0.587518 ] > Std [ 0.402374 ] > Sum [ 74526.703125 ] > Prod [ 0.000000 ] > [iMac-di-Stefano:Con28/SUBJECTS_DIR/surf] Stefano% mris_calc > lh.area.pial stats > Size [ 126355 ] > Min@(index) [ 0.000000 (97676) ] > Max@(index) [ 22.833410 > (119901) ] > Mean [ 0.785660 ] > Std [ 0.738523 ] > Sum [ 99272.054688 ] > Prod [ 0.000000 ] > > but I do not understand what's happen. > > Stefano > > ----Messaggio originale---- > Da: rudo...@nmr.mgh.harvard.edu > Data: 12-set-2013 14.49 > A: <std...@virgilio.it> > Cc: <freesurfer@nmr.mgh.harvard.edu> > Ogg: Re: [Freesurfer] mris_calc erroe in recon-all > > The error would indicate that the number of elements in 'lh.area' and > 'lh.area.pial' are not the same. You can check this also with mris_calc: > > mris_calc lh.area stats > > mris_calc lh.area.pial stats > > which will provide some basic statistical output, including the size > (i.e. number of elements) of each. The sizes have to match in order to > add. > > HTH > -=R > > On 9/12/13 02:56 , std...@virgilio.it wrote: > > Hi list, > > > > I have a problem during recon-all > > > > #@# Surf Volume lh Thu Sep 12 08:25:31 CEST 2013 > > /Applications/freesurfer/subjects/subject_prova/Con28/SUBJECTS_DIR/surf > > \n mris_calc -o lh.area.mid lh.area add lh.area.pial \n > > > > mris_calc: > > Sorry, but I seem to have encountered an error. > > While checking on input filetype sizes, > > I found a size mismatch, i.e. len(input1)!=len(input2) > > > > Darwin iMac-di-Stefano.local 12.4.0 Darwin Kernel Version 12.4.0: Wed > > May 1 17:57:12 PDT 2013; root:xnu-2050.24.15~1/RELEASE_X86_64 x86_64 > > > > recon-all -s SUBJECTS_DIR exited with ERRORS at Thu Sep 12 08:25:31 > > CEST 2013 > > > > For more details, see the log file > > > /Applications/freesurfer/subjects/subject_prova/Con28/SUBJECTS_DIR/scripts/recon-all.log > > To report a problem, see > > http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > > > > > Thanks, > > > > > > > > Stefano > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- > Rudolph Pienaar, M.Eng, D.Eng / email: rudo...@nmr.mgh.harvard.edu > MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging > 149 (2301) 13th Street, Charlestown, MA 02129 USA > > > > The information in this e-mail is intended only for the person to whom > it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you > in error > but does not contain patient information, please contact the sender > and properly > dispose of the e-mail. > > > -- Rudolph Pienaar, M.Eng, D.Eng / email: rudo...@nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149 (2301) 13th Street, Charlestown, MA 02129 USA
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