Hi Jeff, func2roi-sess is obsolete (should not have included it in 5.3). You need to use a combination of funcroi-config and funcroi-sess. See the help with funcroi-config doug
On 09/05/2013 03:45 PM, jwa...@nmr.mgh.harvard.edu wrote: > Hello Freesurfers, > I am re-running an older analysis in stable3. I know that this version > is out of date, but I'm trying to line up new data with old data. I > have previously run a script that uses the func2roi-sess command with > no problems. Now, when I run the same script, I'm getting a new error > - > > command line: func2roi-sess -roidef M6_LH_t6_0_sm5_0thresh -analysis > tap_lh_long_CD_R01BTX_ctrl1_sess1_sm5 -maskcontrast > tap_lh_long_CD_R01BTX_ctrl1_sess1_sm5_contrast -labelfile > /cluster/ablood/1/AdjustedParadigmFiles/Adjusted_recons/CD_R01BTX_ctrl1_sess1_recon/label/M6_LH_CD_R01BTX_ctrl1_sess1.label > -maskthresh 6.0 -masktail pos -maskmap t -s CD_R01BTX_ctrl1_sess1 -df > sessdirfile > > returns: ---------------------------------------------------------- > func2roi-sess logfile is > /autofs/cluster/ablood/1/AdjustedParadigmFiles/log/func2roi-sess.log > ---------------------------------------------------------- > ERROR: cannot find tap_lh_long_CD_R01BTX_ctrl1_sess1_sm5/analysis.info > > > The analysis.info file (and all other files called upon in the script) are > in place and seem to be correctly constructed. The log file > (/cluster/ablood/1/AdjustedParadigmFiles/log/func2roi-sess.log) doesn't > give me any new info. > > Did something change in the last ~6 months with the func2roi command? Any > insights on why it can't find the analysis.info file? > > Thank you! > Jeff > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
