Hi Pablo
have you visually inspected the talairach xform to see if it is indeed
incorrect? What input format did you start with? Most of these occur
because people start with analyze, which doesn't have the direction
cosines, and so the data is oriented incorrectly
cheers
Bruce
On Tue, 27 Aug 2013, pablo najt wrote:
Dear FS experts,I am contacting you to report an error after launching recon
-all for one of my subjects (see below). I am using a
macbook pro with snow leopard version 10.6.8.
I would greatly appreciate if you could advise me which step/s should I take to
correct this.
Thank you for your attention,
Pablo
Error:--------------------------------------------------------------------------------------------------------------------------------
------------------
#@# Talairach Failure Detection Mon Aug 19 23:01:43 EDT 2013
/Users/pablonajt/subjects/tr5713/mri
\n talairach_afd -T 0.005 -xfm transforms/talairach.xfm \n
ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED***
(p=0.0554, pval=0.0034 < threshold=0.0050)
Manual Talairach alignment may be necessary, or
include the -notal-check flag to skip this test,
making sure the -notal-check flag follows -all
or -autorecon1 in the command string.
See http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach
Darwin Pablo-Najts-MacBook-Pro.local 10.8.0 Darwin Kernel Version 10.8.0: Tue
Jun 7 16:33:36 PDT 2011;
root:xnu-1504.15.3~1/RELEASE_I386 i386
recon-all -s tr5713 exited with ERRORS at Mon Aug 19 23:01:43 EDT 2013
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