Hi Sourena the pial surface generation is pretty close to the end of recon-all, so you are probably better off just running the whole thing
cheers Bruce On Sun, 18 Aug 2013, Sourena Soheili-Nezhad wrote: > Hello Freesurfer community > > I am trying to perform a voxelwise longitudinal analysis (outside FS). > I have been searching for brain extraction algorithms and it seems > that Freesurfer provides the most accurate solution. If the primary > objective is highest accuracy, should I use recon-all products > proximal to surface generation (e.g. brain.mgz), or it would be wiser > to further proceed to surface generation? > > Could someone advise me how to stop the recon-all at an optimal step? > > Cheers, > Sourena Soheili-Nezhad > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
